<html><body><title>AT3G18550.2</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321855002000i/AT3G18550.2.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321855002000i/AT3G18550.2.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321855002000i/AT3G18550.2.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121726001000i">AT1G17260.1</a></td><td>0.954983</td><td>AHA10 (Autoinhibited H(+)-ATPase isoform 10)</td><td>OMAT1P006370</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120253001000i">AT1G02530.1</a></td><td>0.953659</td><td>PGP12 (P-GLYCOPROTEIN 12)</td><td>OMAT1P000640</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121074501000i">AT1G10745.1</a></td><td>0.952966</td><td>Encodes a Maternally expressed gene (MEG) family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420915301000i">AT4G09153.1</a></td><td>0.9528</td><td>LCR36 (Low-molecular-weight cysteine-rich 36)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222399002000i">AT2G23990.2</a></td><td>0.952365</td><td>plastocyanin-like domain-containing protein</td><td>OMAT2P104270</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222143001000i">AT2G21430.1</a></td><td>0.950555</td><td>cysteine proteinase A494, putative / thiol protease, putative</td><td>OMAT2P103520</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422426001000i">AT4G24260.1</a></td><td>0.950227</td><td>ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3)</td><td>OMAT4P106510</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322542001000i">AT3G25420.1</a></td><td>0.950136</td><td>scpl21 (serine carboxypeptidase-like 21)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224584001000i">AT2G45840.1</a></td><td>0.949228</td><td>FUNCTIONS IN: molecular_function unknown</td><td>OMAT2P012930</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127356001000i">AT1G73560.1</a></td><td>0.948862</td><td>protease inhibitor/seed storage/lipid transfer protein (LTP) family protein</td><td>OMAT1P118770</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120102001000i">AT1G01020.1</a></td><td>-0.741474</td><td>ARV1</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321327001000i">AT3G13270.1</a></td><td>-0.709292</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123003001000i">AT1G30030.1</a></td><td>-0.661167</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422047001000i">AT4G20470.1</a></td><td>-0.64395</td><td>unknown protein</td><td>OMAT4P105210</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126052001000i">AT1G60520.1</a></td><td>-0.631561</td><td>pseudogene, putative interferon-induced GTP-binding protein mx, blastp match of 52% identity and 3.4e-13 P-value to GP|28475259|emb|CAD67756.1||AJ544824 MxB protein {Danio rerio}</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321190001000i">AT3G11900.1</a></td><td>-0.620997</td><td>ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1)</td><td>OMAT3P004170</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222705001000i">AT2G27050.1</a></td><td>-0.620977</td><td>EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)</td><td>OMAT2P005910</td><td>-</td><td>OMAT2P105220</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126244001000i">AT1G62440.1</a></td><td>-0.614017</td><td>LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2)</td><td>OMAT1P017010</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127078001000i">AT1G70780.1</a></td><td>-0.604327</td><td>unknown protein</td><td>OMAT1P117920</td><td>-</td><td>OMAT1P020200</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127078201000i">AT1G70782.1</a></td><td>-0.604327</td><td>CPuORF28 (Conserved peptide upstream open reading frame 28)</td><td>OMAT1P117920</td><td>-</td><td>OMAT1P020200</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u321855002000i/AT3G18550.2-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.05e-08</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.05e-08 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0019748</td><td>secondary metabolic process</td><td>10/200</td><td>4.32</td><td>2.40e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009056</td><td>catabolic process</td><td>10/200</td><td>2.10</td><td>8.89e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>113/200</td><td>4.65</td><td>2.87e-52</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>148/200</td><td>1.62</td><td>1.08e-16</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0004857</td><td>enzyme inhibitor activity</td><td>10/200</td><td>9.56</td><td>9.67e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>5</td><td>GO:0004091</td><td>carboxylesterase activity</td><td>12/200</td><td>5.99</td><td>1.33e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016788</td><td>hydrolase activity, acting on ester bonds</td><td>16/200</td><td>2.69</td><td>1.09e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0016787</td><td>hydrolase activity</td><td>28/200</td><td>1.79</td><td>9.16e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0020090</td><td>central cell</td><td>12/200</td><td>16.91</td><td>3.64e-13</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0020092</td><td>female gametophyte</td><td>16/200</td><td>5.91</td><td>2.41e-09</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>112/200</td><td>4.74</td><td>1.68e-52</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>112/200</td><td>4.62</td><td>2.12e-51</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G18550&keyword=system">2.91E-15</a></td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>globular</td><td>-</td><td>38/200</td><td>10.13</td><td>4.33e-28</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>defensin</td><td>-</td><td>24/200</td><td>18.48</td><td>8.41e-25</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>secreted</td><td>-</td><td>17/200</td><td>25.24</td><td>8.41e-21</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>weight</td><td>-</td><td>16/200</td><td>23.75</td><td>2.88e-19</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G18550&keyword=weight">1.43E-15</a></td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>encodes</td><td>-</td><td>72/200</td><td>2.82</td><td>9.28e-18</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>cysteine</td><td>-</td><td>20/200</td><td>9.09</td><td>9.75e-15</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>molecular</td><td>-</td><td>18/200</td><td>8.50</td><td>5.70e-13</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G18550&keyword=molecular">3.92E-15</a></td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>similarity</td><td>-</td><td>18/200</td><td>7.48</td><td>5.35e-12</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G18550&keyword=similarity">1.39E-16</a></td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>small</td><td>-</td><td>21/200</td><td>5.21</td><td>1.39e-10</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G18550&keyword=small">1.51E-15</a></td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr006501</td><td>-</td><td>10/200</td><td>13.52</td><td>2.42e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>49/200</td><td>2.53</td><td>2.57e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pectinesterase</td><td>-</td><td>10/200</td><td>10.66</td><td>3.07e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>16/200</td><td>5.35</td><td>1.05e-08</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G18550&keyword=inhibitor">1.16E-15</a></td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>sequence</td><td>-</td><td>18/200</td><td>4.74</td><td>1.11e-08</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G18550&keyword=sequence">2.03E-15</a></td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>pectin</td><td>-</td><td>11/200</td><td>7.26</td><td>4.79e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>pollen</td><td>-</td><td>27/200</td><td>3.03</td><td>8.82e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>33/200</td><td>2.51</td><td>3.15e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>modification</td><td>-</td><td>10/200</td><td>5.88</td><td>1.31e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>embryo</td><td>-</td><td>20/200</td><td>2.88</td><td>7.21e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>enzyme</td><td>-</td><td>13/200</td><td>3.85</td><td>8.65e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>sepal</td><td>-</td><td>10/200</td><td>4.63</td><td>1.26e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>26/200</td><td>2.37</td><td>1.44e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G18550&keyword=member">2.05E-16</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>31/200</td><td>2.12</td><td>2.25e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>31/200</td><td>2.11</td><td>2.60e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>31/200</td><td>2.05</td><td>4.48e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G18550&keyword=differentiation">8.30E-16</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>17/200</td><td>2.33</td><td>4.14e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>10/200</td><td>2.35</td><td>3.96e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cotyledon</td><td>-</td><td>11/200</td><td>2.09</td><td>6.98e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT3G18550&keyword=cotyledon">4.99E-18</a></td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
0.51904700000000003612
without_OMAT_gene
AT3G18550.2